Keyboard won't work after windows starts?

cpt

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2
Location
United States
I have two hard drives in my PC both loaded with windows.
I can switch between HDs with the boot menu option when PC starts.
My iphone froze today and I downloaded a bunch of software to try and fix it, after a restart my keyboard would not work after windows starts. (they light up and get power)
I'm thinking something I downloaded messed something up.
If I boot HD 1 the keyboard/mouse work fine
If I boot HD2 the keyboard/mouse will not work and I get stuck at the password screen and have to hold the power button in to reset.
I've tried 2 other keyboards and nothing worked.
I've ran an anti virus on HD2 (I can access it as a storage drive form HD1.
Any ideas?
Thank you for you help
 
In case this ever happens to someone else it was a program called libusb that was the problem.
I put the windows 7 disk in, booted from disk and restored from an earlier point.
 
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